Submission deadline for papers submitted to ARRĪnonymity period for papers submitted through Softconf STARTĪbstract deadline for Softconf START direct submissionsĪnonymity period for ARR papers to be committed to ACL 2023 Major differences from “standard” recent conferences include:Īll deadlines are 11:59PM UTC-12:00 (“anywhere on Earth”). As in recent years, some of the presentations at the conference will be of papers accepted by the Transactions of the ACL (TACL) and by the Computational Linguistics (CL) journals. Nat Methods 2020.ACL 2023 invites the submission of long and short papers featuring substantial, original, and unpublished research in all aspects of Computational Linguistics and Natural Language Processing. TooMan圜ells identifies and visualizes relationships of single-cell clades. Schwartz GW, Zhou Y, Petrovic J, Fasolino M, Xu L, Shaffer SM, et al.Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics. Plass, M., Solana, J., Alexander Wolf, F., Ayoub, S., Misios, A., Glažar, P., Obermayer, B., Theis, F.J., Kocks, C., and Rajewsky, N.Spatial multi-omic map of human myocardial infarction. An atlas of gene regulatory elements in adult mouse cerebrum. High throughput error corrected Nanopore single cell transcriptome sequencing. Lebrigand, K., Magnone, V., Barbry, P.In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with autism risk genes. Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells. La Manno, G., Gyllborg, D., Codeluppi, S., Nishimura, K., Salto, C., Zeisel, A., Borm, L.E., Stott, S.R.W., Toledo, E.M., Villaescusa, J.C., et al. A Widespread Neurogenic Potential of Neocortical Astrocytes Is Induced by Injury. Zamboni, M., Llorens-Bobadilla, E., Magnusson, J.P., and Frisén, J. Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis. Habermann A, Gutierrez A, Bui L, Yahn S, Winters N, Calvi C, et al. Ex vivo tissue perturbations coupled to single cell RNA-seq reveal multi-lineage cell circuit dynamics in human lung fibrogenesis. C., Geeraerts, E., Anquetil, V., Saniere, L., Wögrath, M., … Schiller, H. A., Zhou, S., Ansari, M., Agami, A., Mayr, C. J., Gote-Schniering, J., Porras-Gonzalez, D., Yang, L., De Sadeleer, L. Single-Cell Mapping of Progressive Fetal-to-Adult Transition in Human Naive T Cells. Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution. J., Alvarez-Franco, A., Hou, R., Pflueger, C., McDonald, K., Polo, J. D., Pflueger, J., Buckberry, S., Vargas-Landin, D. Inferring and perturbing cell fate regulomes in human brain organoids. J., Wollny, D., Zenk, F., Seimiya, M., Jain, A., Okamoto, R., Santel, M., He, Z., Camp, J. Molecular and cellular evolution of the primate dorsolateral prefrontal cortex. K., Gomez-Sanchez, Z., Qi, C., Gobeske, K. N., Mato-Blanco, X., Kovner, R., Krsnik, Ž., de Martin, X., Luria, V., Martí-Pérez, X., Liang, D., Karger, A., Schmidt, D. Ma, S., Skarica, M., Li, Q., Xu, C., Risgaard, R. Interneuron origin and molecular diversity in the human fetal brain. Chromatin and gene-regulatory dynamics of the developing human cerebral cortex at single-cell resolution. Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing. Hochgerner, H., Zeisel, A., Lönnerberg, P., and Linnarsson, S. Single cell transcriptomics identifies a signaling network coordinating endoderm and mesoderm diversification during foregut organogenesis. Han, L., Chaturvedi, P., Kishimoto, K., Koike, H., Nasr, T., Iwasawa, K., Giesbrecht, K., Witcher, P.C., Eicher, A., Haines, L., et al.The Tabula Sapiens: a multiple organ single cell transcriptomic atlas of humans.
PAPERS WITH CODE SKIN
Poised cell circuits in human skin are activated in disease. A molecular cell atlas of the human lung from single-cell RNA sequencing. A single-cell transcriptomic atlas characterizes ageing tissues in the mouse. A Single-Cell Tumor Immune Atlas for Precision Oncology. Nieto, P., Marc Elosua-Bayes, M., Trincado, J.L., Marchese, D., Massoni-Badosa, R., Salvany, M., Henriques, A., Mereu, E., Moutinho, C., Ruiz, S., et al. A multicenter study benchmarking single-cell RNA sequencing technologies using reference samples. Current best practices in single‐cell RNA‐seq analysis: a tutorial. 'Papers with code' here means that authors provide necessary codes to reproduce figures or results in their papers.
PAPERS WITH CODE CODE
Single cell papers with code can not only facilitate the reproducibility of biomedical researches, but also promote our skills of analyzing single cell data.
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